The average chief technology officer (cto) salary in San Francisco, California is $166,051 or an equivalent hourly rate of $80. The average salary for a CTO (Chief Technology Officer) in San Francisco Bay Area is $233,958. The average salary for a Chief Technology Officer (CTO) is $162,168. The average salary for Chief Technology Officer jobs near San Francisco, CA is $138,619. The pay package includes retirement, health, overtime, pension, and other benefits on top of base salary. In addition, they earn an average bonus of $15,410. 165 Chief Technology Officer Salaries in San Francisco, CA provided anonymously by employees. CTO (Chief Technology Officer) salaries are based on responses gathered by Built In San Francisco from anonymous CTO (Chief Technology Officer) employees in San Francisco Bay Area. Salary information is updated daily. This is 23% higher (+$31,588) than the average chief technology officer (cto) salary in the United States. What salary does a Chief Technology Officer earn in San Francisco? The average salary for a Chief Technology Officer (CTO) with SQL skills in San Francisco, California is $165,000. * Top 10 Related Jobs and Salaries Click a salary below to compare with Chief Technology Officer salaries in San Francisco, CA. Learn about salaries, benefits, salary satisfaction and where you could earn the most. The average salary for the role of Chief Technology Officer is in San Francisco Bay Area is $180,000. Best Cities for Jobs 2020 NEW! The average salary for a Chief Technology Officer (CTO) with Project Management skills in San Francisco, California is $198,318. The average salary for a Chief Technology Officer is $121,237 per year in San Francisco, CA. Visit PayScale to research chief technology officer (cto) salaries by city, experience, skill, employer and more. Visit PayScale to research Chief Technology Officer ( CTO ) salaries by city, experience, skill employer! 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